servers:
- url: https://ontology-kp.apps.renci.org
  description: Default server
  x-maturity: production
  x-location: RENCI
components:
  schemas:
    TRAPIQueryGraph:
      required:
      - nodes
      - edges
      type: object
      properties:
        nodes:
          $ref: '#/components/schemas/Map_TRAPIQueryNode'
        edges:
          $ref: '#/components/schemas/Map_TRAPIQueryEdge'
    TRAPINode:
      type: object
      properties:
        name:
          type: string
        categories:
          type: array
          items:
            $ref: '#/components/schemas/BiolinkTerm'
        attributes:
          type: array
          items:
            $ref: '#/components/schemas/TRAPIAttribute'
    Map_TRAPIEdge:
      type: object
      additionalProperties:
        $ref: '#/components/schemas/TRAPIEdge'
    TRAPIKnowledgeGraph:
      required:
      - edges
      type: object
      properties:
        nodes:
          type: array
          items:
            $ref: '#/components/schemas/TRAPINode'
        edges:
          $ref: '#/components/schemas/Map_TRAPIEdge'
    TRAPIAttribute:
      required:
      - attribute_type_id
      - value
      type: object
      properties:
        value_type_id:
          $ref: '#/components/schemas/IRI'
        value:
          type: string
        attribute_type_id:
          $ref: '#/components/schemas/IRI'
        attributes:
          type: array
          items:
            $ref: '#/components/schemas/TRAPIAttribute'
        description:
          type: string
        value_url:
          type: string
        attribute_source:
          type: string
        original_attribute_name:
          type: string
    IRI:
      required:
      - value
      type: object
      properties:
        value:
          type: string
    TRAPIAttributeConstraint:
      required:
      - id
      - name
      - operator
      - value
      type: object
      properties:
        operator:
          type: string
        unit_id:
          $ref: '#/components/schemas/IRI'
        not:
          type: boolean
        name:
          type: string
        id:
          $ref: '#/components/schemas/IRI'
        unit_name:
          type: string
        value:
          type: string
    TRAPIEdge:
      required:
      - subject
      - object
      type: object
      properties:
        predicate:
          $ref: '#/components/schemas/BiolinkTerm'
        subject:
          $ref: '#/components/schemas/IRI'
        object:
          $ref: '#/components/schemas/IRI'
        attributes:
          type: array
          items:
            $ref: '#/components/schemas/TRAPIAttribute'
    TRAPIQualifier:
      required:
      - qualifier_type_id
      - qualifier_value
      type: object
      properties:
        qualifier_type_id:
          type: string
        qualifier_value:
          type: string
    TRAPIQuery:
      required:
      - message
      type: object
      properties:
        message:
          $ref: '#/components/schemas/TRAPIMessage'
        log_level:
          type: string
        submitter:
          type: string
    TRAPIQualifierConstraint:
      type: object
      properties:
        qualifier_set:
          type: array
          items:
            $ref: '#/components/schemas/TRAPIQualifier'
    BiolinkTerm:
      required:
      - shorthand
      - iri
      type: object
      properties:
        shorthand:
          type: string
        iri:
          $ref: '#/components/schemas/IRI'
    TRAPIQueryEdge:
      required:
      - subject
      - object
      type: object
      properties:
        object:
          type: string
        qualifier_constraints:
          type: array
          items:
            $ref: '#/components/schemas/TRAPIQualifierConstraint'
        subject:
          type: string
        knowledge_type:
          type: string
        attribute_constraints:
          type: array
          items:
            $ref: '#/components/schemas/TRAPIAttributeConstraint'
        predicates:
          type: array
          items:
            $ref: '#/components/schemas/BiolinkTerm'
    MetaAttribute:
      required:
      - attribute_type_id
      type: object
      properties:
        constraint_use:
          type: boolean
        constraint_name:
          type: string
        attribute_source:
          type: string
        original_attribute_names:
          type: array
          items:
            type: string
        attribute_type_id:
          $ref: '#/components/schemas/IRI'
    TRAPIResponse:
      required:
      - message
      type: object
      properties:
        message:
          $ref: '#/components/schemas/TRAPIMessage'
    TRAPIEdgeBinding:
      required:
      - id
      type: object
      properties:
        id:
          type: string
    MetaKnowledgeGraph:
      type: object
      properties:
        nodes:
          type: array
          items:
            $ref: '#/components/schemas/MetaNode'
        edges:
          type: array
          items:
            $ref: '#/components/schemas/MetaEdge'
    Map_TRAPIQueryNode:
      type: object
      additionalProperties:
        $ref: '#/components/schemas/TRAPIQueryNode'
    Map_List_TRAPINodeBinding:
      type: object
      additionalProperties:
        type: array
        items:
          $ref: '#/components/schemas/TRAPINodeBinding'
    TRAPIResult:
      required:
      - node_bindings
      - edge_bindings
      type: object
      properties:
        node_bindings:
          $ref: '#/components/schemas/Map_List_TRAPINodeBinding'
        edge_bindings:
          $ref: '#/components/schemas/Map_List_TRAPIEdgeBinding'
    TRAPINodeBinding:
      required:
      - id
      type: object
      properties:
        id:
          $ref: '#/components/schemas/IRI'
        query_id:
          $ref: '#/components/schemas/IRI'
        attributes:
          type: array
          items:
            $ref: '#/components/schemas/TRAPIAttribute'
    Map_List_TRAPIEdgeBinding:
      type: object
      additionalProperties:
        type: array
        items:
          $ref: '#/components/schemas/TRAPIEdgeBinding'
    TRAPIMessage:
      type: object
      properties:
        query_graph:
          $ref: '#/components/schemas/TRAPIQueryGraph'
        knowledge_graph:
          $ref: '#/components/schemas/TRAPIKnowledgeGraph'
        results:
          type: array
          items:
            $ref: '#/components/schemas/TRAPIResult'
    MetaNode:
      type: object
      properties:
        id_prefixes:
          type: array
          items:
            type: string
    MetaEdge:
      required:
      - subject
      - predicate
      - object
      type: object
      properties:
        attributes:
          type: array
          items:
            $ref: '#/components/schemas/MetaAttribute'
        object:
          $ref: '#/components/schemas/BiolinkTerm'
        predicate:
          $ref: '#/components/schemas/BiolinkTerm'
        knowledge_types:
          type: array
          items:
            type: string
        subject:
          $ref: '#/components/schemas/BiolinkTerm'
    Map_TRAPIQueryEdge:
      type: object
      additionalProperties:
        $ref: '#/components/schemas/TRAPIQueryEdge'
    TRAPIQueryNode:
      type: object
      properties:
        categories:
          type: array
          items:
            $ref: '#/components/schemas/BiolinkTerm'
        ids:
          type: array
          items:
            $ref: '#/components/schemas/IRI'
        is_set:
          type: boolean
        constraints:
          type: array
          items:
            $ref: '#/components/schemas/TRAPIAttributeConstraint'
info:
  version: '0.1'
  x-translator:
    infores: infores:sri-ontology
    component: KP
    team:
    - Standards Reference Implementation Team
    biolink-version: 2.2.4
  termsOfService: https://opensource.org/licenses/MIT
  description: TRAPI interface to integrated ontology knowledgebase
  license:
    name: MIT License
    url: https://opensource.org/licenses/MIT
  contact:
    name: Jim Balhoff
    email: balhoff@renci.org
  x-trapi:
    version: 1.3.0
    operations:
    - lookup
  title: Ontology-KP API
openapi: 3.0.1
paths:
  /query:
    post:
      parameters:
      - example: 10
        required: false
        schema:
          type: integer
        name: limit
        in: query
      operationId: postQuery
      summary: Submit a TRAPI question graph and retrieve matching solutions
      responses:
        '200':
          description: ''
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/TRAPIResponse'
        default:
          description: ''
          content:
            text/plain:
              schema:
                type: string
      requestBody:
        content:
          application/json:
            schema:
              $ref: '#/components/schemas/TRAPIQuery'
            example:
              message:
                query_graph:
                  nodes:
                    n0:
                      categories:
                      - biolink:BiologicalProcess
                      is_set: false
                    n1:
                      categories:
                      - biolink:BiologicalProcess
                      is_set: false
                  edges:
                    e0:
                      predicates:
                      - biolink:part_of
                      subject: n1
                      object: n0
        required: true
  /meta_knowledge_graph:
    get:
      summary: Meta knowledge graph representation of this TRAPI web service.
      operationId: getMeta_knowledge_graph
      responses:
        '200':
          description: ''
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/MetaKnowledgeGraph'
        default:
          description: ''
          content:
            text/plain:
              schema:
                type: string
tags:
- name: translator
- name: trapi